Gene detail

Detailed information of OS493_002285-T1 in Lophelia pertusa

Genomic Location: scaffold_4:7984088...7984963
NR annotation: KAJ7375510.1, passive transmembrane transporter [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009115 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00230 all species →	MIP	Major intrinsic protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051883 all species →	Family	Aquaporin-11/12 water channel	Interproscan
IPR023271 all species →	Homologous_superfamily	Aquaporin-like	Interproscan
IPR000425 all species →	Family	Major intrinsic protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21191 all species →	AQUAPORIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0015267 all species →	Molecular Function	channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002285-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002285-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

15.6Max TPM

7.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.90	12.05
polyp at pH7 6	18	18	6.58	13.56
coral polyp · control treatment	16	16	6.08	9.02
coral polyp · oil and dispersant treatment	16	16	7.30	14.22
coral polyp · oil treatment	16	16	8.59	15.58
coral polyp · dispersant treatment	16	16	7.00	12.30
Polyp	10	10	6.91	9.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.05
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.37
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.72
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.45
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.92
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.92
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.72
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.44
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.40
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.26
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.71
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.72
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.56
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.56
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.91
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.48
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.15
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.19
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.49
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.23
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.92
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.60
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.42
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.26
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.02
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.79
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.98
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.32
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.03
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.23
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.88
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.78
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.11
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.81
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.73
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.62
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.22
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.85
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.50
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.09
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.69
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.35
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.10
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.84
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.88
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.69
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.59
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.50
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.45
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.28
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.58
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.07
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.17
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.65
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.58
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.64
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.55
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.95
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.88
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.49
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.83
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.42
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.26
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.04
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.42
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.30
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.34
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.29
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.01
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.56
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.23
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.07
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.84
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.67
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.42
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.01
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.32
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.42
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.39
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.07
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.95

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.