Gene detail

Detailed information of OS493_002326-T1 in Lophelia pertusa

Genomic Location: scaffold_5:609415...612355
NR annotation: KAJ7365618.1, hypothetical protein OS493_002326 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95497	Pantetheinase OS=Homo sapiens OX=9606 GN=VNN1 PE=1 SV=2
Q58CQ9	Pantetheinase OS=Bos taurus OX=9913 GN=VNN1 PE=1 SV=1
Q9BDJ5	Pantetheinase OS=Sus scrofa OX=9823 GN=VNN1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19018 all species →	Vanin_C	Vanin C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036526 all species →	Homologous_superfamily	Carbon-nitrogen hydrolase superfamily	Interproscan
IPR003010 all species →	Domain	Carbon-nitrogen hydrolase	Interproscan
IPR040154 all species →	Family	Biotinidase/VNN family	Interproscan
IPR043957 all species →	Domain	Vanin, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10609 all species →	BIOTINIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002326-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002326-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

147.9Max TPM

32.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.07	34.91
polyp at pH7 6	18	18	19.78	43.36
coral polyp · control treatment	16	16	32.61	95.03
coral polyp · oil and dispersant treatment	16	16	67.87	147.90
coral polyp · oil treatment	16	16	31.35	79.27
coral polyp · dispersant treatment	16	16	39.67	145.63
Polyp	10	10	10.63	23.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.91
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.53
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.60
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.75
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.61
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.05
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.27
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.63
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.31
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.18
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.18
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.78
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.14
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.52
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.36
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.71
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.63
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.33
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.33
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.60
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.68
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.66
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.94
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.01
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.31
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.89
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.74
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.03
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.65
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.57
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.94
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.74
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.88
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.59
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.55
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.35
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.32
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.93
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.90
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	145.96
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	125.91
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	121.84
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	100.39
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.70
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.71
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.38
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.07
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.29
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.79
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.29
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.60
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.38
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.66
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.13
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.85
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.35
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.61
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.75
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.27
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.29
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.92
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.80
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.54
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	145.63
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	112.83
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.62
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.52
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.01
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.65
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.60
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.07
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.28
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.97
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	23.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.06
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.55
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.17
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.99
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.63

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.