Detailed information of OS493_002375-T1 in Lophelia pertusa

Genomic Location: scaffold_5:1317830...1318683
NR annotation: KAJ7365663.1, Glycine--tRNA ligase 1, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5I0G4Glycine--tRNA ligase OS=Rattus norvegicus OX=10116 GN=Gars1 PE=1 SV=2
Q9CZD3Glycine--tRNA ligase OS=Mus musculus OX=10090 GN=Gars1 PE=1 SV=1
P41250Glycine--tRNA ligase OS=Homo sapiens OX=9606 GN=GARS1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0085610 (this species only)

 Pfam domain
No Pfam domain signature was detected for OS493_002375-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR027031
all species →		FamilyGlycyl-tRNA synthetase/DNA polymerase subunit gamma-2Interproscan
IPR045864
all species →		Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10745
all species →		GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004820
all species →		Molecular Functionglycine-tRNA ligase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0006426
all species →		Biological Processglycyl-tRNA aminoacylationInterproscan
GO:0070150
all species →		Biological Processmitochondrial glycyl-tRNA aminoacylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_002375-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_002375-T1 global co-expression network
TOP