Detailed information of OS493_002376-T1 in Lophelia pertusa

Genomic Location: scaffold_5:1319061...1330519
NR annotation: KAJ7365664.1, Glycine--tRNA ligase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P41250Glycine--tRNA ligase OS=Homo sapiens OX=9606 GN=GARS1 PE=1 SV=3
Q5RBL1Glycine--tRNA ligase OS=Pongo abelii OX=9601 GN=GARS1 PE=2 SV=1
Q5I0G4Glycine--tRNA ligase OS=Rattus norvegicus OX=10116 GN=Gars1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004597 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00587
all species →		tRNA-synt_2btRNA synthetase class II core domain (G, H, P, S and T)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002314
all species →		DomainAminoacyl-tRNA synthetase, class II (G/ P/ S/T)Interproscan
IPR027031
all species →		FamilyGlycyl-tRNA synthetase/DNA polymerase subunit gamma-2Interproscan
IPR045864
all species →		Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR006195
all species →		DomainAminoacyl-tRNA synthetase, class IIInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10745
all species →		GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006418
all species →		Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0004820
all species →		Molecular Functionglycine-tRNA ligase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0006426
all species →		Biological Processglycyl-tRNA aminoacylationInterproscan
GO:0070150
all species →		Biological Processmitochondrial glycyl-tRNA aminoacylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_002376-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_002376-T1 global co-expression network
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