Gene detail

Detailed information of OS493_002402-T1 in Lophelia pertusa

Genomic Location: scaffold_5:1717586...1722961
NR annotation: KAJ7365687.1, Ubiquilin-4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UMX0	Ubiquilin-1 OS=Homo sapiens OX=9606 GN=UBQLN1 PE=1 SV=2
Q5R684	Ubiquilin-1 OS=Pongo abelii OX=9601 GN=UBQLN1 PE=2 SV=1
Q8R317	Ubiquilin-1 OS=Mus musculus OX=10090 GN=Ubqln1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005232 (this species only)
Ubiquitin family	UBD\|Alpha-Helix\|UBA · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00627 all species →	UBA	UBA/TS-N domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR015496 all species →	Family	Ubiquilin	Interproscan
IPR006636 all species →	Domain	Heat shock chaperonin-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10677 all species →	UBIQUILIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031593 all species →	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04523	UBQLN, DSK2; ubiquilin	-	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_002402-T1 global co-expression network