Gene detail

Detailed information of OS493_002404-T1 in Lophelia pertusa

Genomic Location: scaffold_5:1735347...1748635
NR annotation: KAJ7365689.1, G kinase anchoring protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006364 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_002404-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR026109 all species →	Family	G kinase-anchoring protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14899 all species →	G KINASE ANCHORING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002404-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002404-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

89.5Max TPM

29.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	32.10	43.53
polyp at pH7 6	18	18	37.42	51.90
coral polyp · control treatment	16	16	34.71	89.47
coral polyp · oil and dispersant treatment	16	16	32.87	50.52
coral polyp · oil treatment	16	16	27.72	42.89
coral polyp · dispersant treatment	16	16	19.68	35.45
Polyp	10	10	17.39	31.80

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.53
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.56
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.13
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.70
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.33
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.55
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.71
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.48
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.32
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.41
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.76
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.55
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.52
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.98
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.08
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.90
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.50
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.87
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.84
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.14
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.02
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.96
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.47
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.44
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.39
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.37
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.13
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.88
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.84
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.16
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.32
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.47
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.98
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.72
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.45
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.18
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.27
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.78
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.53
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.79
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.67
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.81
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.55
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.79
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.72
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.16
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.64
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.95
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.83
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.68
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.61
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.84
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.49
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.10
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.09
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.88
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.77
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.71
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.89
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.97
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.27
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.93
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.33
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.40
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.66
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.58
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.59
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.58
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.93
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.45
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.80
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.92
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.86
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.88
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.99
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.93
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.87
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.30
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.24
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	31.80
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	28.13
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	16.72
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.36
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.43
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.38
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.91
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.95

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.