Gene detail

Detailed information of OS493_002525-T1 in Lophelia pertusa

Genomic Location: scaffold_5:3497445...3499455
NR annotation: KAJ7365806.1, Receptor expression-enhancing protein 5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q00765	Receptor expression-enhancing protein 5 OS=Homo sapiens OX=9606 GN=REEP5 PE=1 SV=3
Q5RE33	Receptor expression-enhancing protein 5 OS=Pongo abelii OX=9601 GN=REEP5 PE=2 SV=1
Q29RM3	Receptor expression-enhancing protein 5 OS=Bos taurus OX=9913 GN=REEP5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002077 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03134 all species →	TB2_DP1_HVA22	TB2/DP1, HVA22 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004345 all species →	Family	TB2/DP1/HVA22-related protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12300 all species →	HVA22-LIKE PROTEINS	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_002525-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002525-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002525-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

273.3Max TPM

116.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	84.34	120.87
polyp at pH7 6	18	18	87.32	144.89
coral polyp · control treatment	16	16	135.04	208.93
coral polyp · oil and dispersant treatment	16	16	146.26	272.95
coral polyp · oil treatment	16	16	128.83	230.87
coral polyp · dispersant treatment	16	16	139.40	273.27
Polyp	10	10	91.22	150.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	120.87
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	117.20
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	113.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	111.14
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	108.48
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	107.08
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.91
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	79.66
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.48
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.79
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.25
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.22
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.57
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.03
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.88
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.12
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	144.89
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	140.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	121.19
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	119.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	106.03
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	103.10
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	98.67
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	96.99
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.95
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	90.57
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	90.55
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.83
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.70
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.10
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.01
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	208.93
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	191.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	189.63
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	183.98
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	175.48
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	151.62
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	149.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	145.14
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	143.49
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	134.09
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	121.11
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.73
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.78
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.77
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	272.95
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	238.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	227.86
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	171.22
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	167.60
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	156.58
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	154.52
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	152.71
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	148.47
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	140.12
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	123.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.89
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.62
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.94
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.55
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	230.87
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	209.89
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	174.43
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	170.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	157.81
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	157.42
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	151.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	150.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	124.66
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	120.02
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	116.65
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	109.71
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.26
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.87
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.75
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.96
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	273.27
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	206.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	186.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	176.79
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	172.81
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	160.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	156.77
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	154.80
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	140.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	140.77
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	137.87
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	98.27
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	95.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.49
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.94
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.11
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	150.83
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	146.45
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	118.79
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	108.61
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	99.49
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	77.50
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	70.38
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	57.43
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	52.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	29.87

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.