Gene detail

Detailed information of OS493_002538-T1 in Lophelia pertusa

Genomic Location: scaffold_5:3599757...3600389
NR annotation: KAJ7365817.1, Alpha/beta hydrolase domain-containing protein 17B [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XIJ5	Alpha/beta hydrolase domain-containing protein 17A OS=Rattus norvegicus OX=10116 GN=Abhd17a PE=1 SV=1
Q2HJ19	Alpha/beta hydrolase domain-containing protein 17A OS=Bos taurus OX=9913 GN=ABHD17A PE=2 SV=1
Q99JW1	Alpha/beta hydrolase domain-containing protein 17A OS=Mus musculus OX=10090 GN=Abhd17a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008687 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12146 all species →	Hydrolase_4	Serine aminopeptidase, S33	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022742 all species →	Domain	Serine aminopeptidase, S33	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12277 all species →	ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002084 all species →	Biological Process	protein depalmitoylation	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008474 all species →	Molecular Function	palmitoyl-(protein) hydrolase activity	Interproscan
GO:0010008 all species →	Cellular Component	endosome membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002538-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002538-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

607.4Max TPM

63.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.56	31.37
polyp at pH7 6	18	18	21.77	33.49
coral polyp · control treatment	16	16	51.81	159.97
coral polyp · oil and dispersant treatment	16	16	96.15	168.93
coral polyp · oil treatment	16	16	38.69	87.36
coral polyp · dispersant treatment	16	16	190.29	607.38
Polyp	10	10	15.09	29.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.37
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.61
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.54
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.27
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.95
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.16
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.57
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.15
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.14
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.42
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.36
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.84
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.49
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.92
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.86
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.32
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.69
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.79
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.20
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.85
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.72
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.74
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.99
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.10
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	159.97
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.30
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.49
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.42
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.26
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.71
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.80
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.46
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.82
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.07
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.40
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.50
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	168.93
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	163.45
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	146.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	132.23
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	128.32
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	112.56
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.56
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.56
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.88
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.91
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.31
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.30
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	87.36
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.20
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.76
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.02
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.47
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.07
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.23
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.63
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.40
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.94
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	607.38
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	412.38
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	260.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	251.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	233.74
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	203.60
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	188.75
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	171.14
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	163.37
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	156.85
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	111.76
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.21
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.14
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.77
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.28
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	29.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	21.78
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	21.64
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.08
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.94
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.71
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.03
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.11
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.27

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.