Detailed information of OS493_002576-T1 in Lophelia pertusa

Genomic Location: scaffold_5:4741442...4747194
NR annotation: KAJ7365854.1, Ribosome biogenesis protein [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9CR47Ribosome biogenesis protein NSA2 homolog OS=Mus musculus OX=10090 GN=Nsa2 PE=2 SV=1
O95478Ribosome biogenesis protein NSA2 homolog OS=Homo sapiens OX=9606 GN=NSA2 PE=1 SV=1
Q3SX11Ribosome biogenesis protein NSA2 homolog OS=Bos taurus OX=9913 GN=NSA2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007938 (this species only)

 Pfam domain
No Pfam domain signature was detected for OS493_002576-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR039411
all species →		FamilyRibosomal biogenesis NSA2 familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12642
all species →		RIBOSOME BIOGENESIS PROTEIN NSA2 HOMOLOGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000460
all species →		Biological Processmaturation of 5.8S rRNAInterproscan
GO:0000470
all species →		Biological Processmaturation of LSU-rRNAInterproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0030687
all species →		Cellular Componentpreribosome, large subunit precursorInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14842NSA2; ribosome biogenesis protein NSA2-Ribosome biogenesisko03009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_002576-T1 global co-expression network
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