Gene detail

Detailed information of OS493_002577-T1 in Lophelia pertusa

Genomic Location: scaffold_5:4751017...4757761
NR annotation: KAJ7365855.1, hypothetical protein OS493_002577 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9M8Z7	Sterol 3-beta-glucosyltransferase UGT80A2 OS=Arabidopsis thaliana OX=3702 GN=UGT80A2 PE=1 SV=1
P96560	Glycosyltransferase GtfC OS=Amycolatopsis orientalis OX=31958 GN=gtfC PE=1 SV=1
Q9AFC6	Glycosyltransferase GtfE OS=Amycolatopsis orientalis OX=31958 GN=gtfE PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010234 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06722 all species →	EryCIII-like_C	Erythromycin biosynthesis protein CIII-like, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010610 all species →	Domain	Erythromycin biosynthesis protein CIII-like, C-terminal domain	Interproscan
IPR002213 all species →	Family	UDP-glucuronosyl/UDP-glucosyltransferase	Interproscan
IPR050426 all species →	Family	Glycosyltransferase 28	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48050 all species →	STEROL 3-BETA-GLUCOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008194 all species →	Molecular Function	UDP-glycosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002577-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002577-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

27.6Max TPM

15.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.98	27.56
polyp at pH7 6	18	18	16.08	21.91
coral polyp · control treatment	16	16	15.73	24.37
coral polyp · oil and dispersant treatment	16	16	17.37	25.49
coral polyp · oil treatment	16	16	14.72	24.67
coral polyp · dispersant treatment	16	16	13.14	21.20
Polyp	10	10	12.36	22.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.56
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.32
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.72
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.29
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.49
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.95
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.80
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.44
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.15
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.86
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.65
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.08
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.76
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.46
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.12
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.91
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.23
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.84
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.52
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.79
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.14
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.68
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.56
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.49
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.19
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.13
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.79
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.92
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.39
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.67
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.37
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.63
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.21
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.82
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.47
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.03
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.37
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.38
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.57
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.97
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.70
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.42
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.39
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.49
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.76
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.84
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.56
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.13
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.28
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.01
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.01
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.31
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.93
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.53
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.60
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.39
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.96
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.53
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.45
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.41
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.90
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.71
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.24
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.18
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.06
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.07
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.38
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.87
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.83
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.58
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.96
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.23
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.73
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.56
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.93
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	22.97
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.29
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.35
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.74
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.91
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.99
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.74
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.05

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.