Gene detail

Detailed information of OS493_002579-T1 in Lophelia pertusa

Genomic Location: scaffold_5:4775858...4782001
NR annotation: KAJ7365857.1, 5'-nucleotidase domain-containing protein 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GN91	5'-nucleotidase domain-containing protein 3 OS=Xenopus laevis OX=8355 GN=nt5dc3 PE=2 SV=1
Q75K12	5'-nucleotidase domain-containing protein DDB_G0275467 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0275467 PE=3 SV=1
A4IHT9	5'-nucleotidase domain-containing protein 3 OS=Xenopus tropicalis OX=8364 GN=nt5dc3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004426 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05761 all species →	5_nucleotid	5' nucleotidase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR008380 all species →	Family	HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12103 all species →	5'-NUCLEOTIDASE DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008253 all species →	Molecular Function	5'-nucleotidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002579-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002579-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

100TPM > 0

7Conditions

36.7Max TPM

4.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	3.70	9.15
polyp at pH7 6	18	15	3.13	6.37
coral polyp · control treatment	16	15	6.34	33.11
coral polyp · oil and dispersant treatment	16	16	5.10	36.69
coral polyp · oil treatment	16	15	5.52	11.17
coral polyp · dispersant treatment	16	15	5.68	12.51
Polyp	10	8	2.48	5.91

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.15
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.34
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.24
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.78
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.01
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.77
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.45
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.37
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.72
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.24
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.07
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.78
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.80
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.94
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.81
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.48
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.10
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.79
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.47
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.63
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.38
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.64
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.27
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.69
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.47
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.50
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.13
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.96
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.43
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.20
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.06
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.53
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.48
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.17
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.79
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.88
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.24
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.12
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.98
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.38
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.08
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.50
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.31
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.95
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.54
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.27
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.49
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.33
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.08
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.83
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.52
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.57
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.24
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.04
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.58
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.14
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.86
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.22
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.01
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.92
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.83
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.89
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.