Gene detail

Detailed information of OS493_002586-T1 in Lophelia pertusa

Genomic Location: scaffold_5:4894596...4897513
NR annotation: KAJ7365864.1, 1,3-beta-glucanosyltransferase gas1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008705 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02351 all species →	GDNF	GDNF/GAS1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039596 all species →	Family	Growth arrest-specific protein 1	Interproscan
IPR016017 all species →	Domain	GDNF/GAS1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16840 all species →	GROWTH ARREST-SPECIFIC PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06232	GAS1; growth arrest-specific 1	-	Hedgehog signaling pathway	ko04340	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002586-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

43.8Max TPM

14.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.27	23.43
polyp at pH7 6	18	18	14.55	28.02
coral polyp · control treatment	16	16	19.56	43.84
coral polyp · oil and dispersant treatment	16	16	14.15	33.19
coral polyp · oil treatment	16	16	13.14	29.57
coral polyp · dispersant treatment	16	16	13.15	26.38
Polyp	10	10	9.38	29.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.28
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.58
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.48
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.76
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.81
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.73
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.25
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.11
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.30
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.28
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.17
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.08
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.49
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.19
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.02
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.46
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.15
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.03
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.16
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.10
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.77
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.78
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.88
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.70
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.55
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.62
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.84
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.43
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.21
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.69
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.49
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.13
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.78
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.35
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.09
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.19
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.92
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.46
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.25
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.20
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.93
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.26
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.63
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.39
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.68
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.23
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.57
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.77
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.24
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.01
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.79
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.64
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.83
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.70
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.33
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.71
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.07
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.97
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.38
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.76
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.53
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.37
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.04
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.30
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.88
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.75
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.91
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.84
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.41
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	29.11
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.66
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.68
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.65
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.50
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.23
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.98
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.24
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.02

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.