Gene detail

Detailed information of OS493_002620-T1 in Lophelia pertusa

Genomic Location: scaffold_5:5449543...5456739
NR annotation: KAJ7365894.1, hypothetical protein OS493_002620 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CXK4	Sugar transporter SWEET1 OS=Mus musculus OX=10090 GN=Slc50a1 PE=2 SV=1
D3ZH22	Sugar transporter SWEET1 OS=Rattus norvegicus OX=10116 GN=Slc50a1 PE=1 SV=1
Q9BRV3	Sugar transporter SWEET1 OS=Homo sapiens OX=9606 GN=SLC50A1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002288 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03083 all species →	MtN3_slv	Sugar efflux transporter for intercellular exchange	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047664 all species →	Family	Sugar transporter SWEET	Interproscan
IPR004316 all species →	Repeat	Sugar transporter SWEET repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10791 all species →	RAG1-ACTIVATING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008643 all species →	Biological Process	carbohydrate transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0051119 all species →	Molecular Function	sugar transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15382	SLC50A, SWEET; solute carrier family 50 (sugar transporter)	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002620-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

27.8Max TPM

12.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.38	14.59
polyp at pH7 6	18	18	9.64	16.41
coral polyp · control treatment	16	16	17.41	26.18
coral polyp · oil and dispersant treatment	16	16	15.50	20.08
coral polyp · oil treatment	16	16	15.74	26.95
coral polyp · dispersant treatment	16	16	11.85	24.86
Polyp	10	9	11.26	27.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.11
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.87
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.16
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.15
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.14
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.32
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.86
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.62
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.52
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.36
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.41
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.68
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.23
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.34
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.10
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.85
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.28
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.17
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.08
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.73
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.68
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.62
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.18
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.51
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.25
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.80
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.37
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.28
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.99
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.50
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.08
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.64
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.12
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.44
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.98
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.61
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.21
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.81
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.95
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.94
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.76
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.05
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.14
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.09
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.62
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.52
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.83
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.06
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.86
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.14
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.63
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.97
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.79
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.95
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.28
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.26
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.12
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.48
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.30
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	27.81
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.59
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.86
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.39
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.37
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.67
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.