Gene detail

Detailed information of OS493_002645-T1 in Lophelia pertusa

Genomic Location: scaffold_5:5737201...5737863
NR annotation: KAJ7365915.1, hypothetical protein OS493_002645 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5EAR6	Vacuolar ATPase assembly protein VMA22 OS=Danio rerio OX=7955 GN=vma22 PE=2 SV=1
Q3SZB5	Vacuolar ATPase assembly protein VMA22 OS=Bos taurus OX=9913 GN=VMA22 PE=2 SV=1
Q8VE99	Vacuolar ATPase assembly protein VMA22 OS=Mus musculus OX=10090 GN=Vma22 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009735 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21730 all species →	Vma22_CCDC115	Vma22/CCDC115	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040357 all species →	Family	Vma22/CCDC115	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31996 all species →	COILED-COIL DOMAIN-CONTAINING PROTEIN 115	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0070072 all species →	Biological Process	vacuolar proton-transporting V-type ATPase complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23543	CCDC115; coiled-coil domain-containing protein 115	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002645-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

11.0Max TPM

4.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.56	10.99
polyp at pH7 6	18	17	5.60	10.80
coral polyp · control treatment	16	16	5.81	8.48
coral polyp · oil and dispersant treatment	16	15	2.85	5.54
coral polyp · oil treatment	16	16	6.05	9.21
coral polyp · dispersant treatment	16	16	1.83	4.51
Polyp	10	9	3.80	6.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.99
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.13
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.09
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.95
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.92
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.69
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.87
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.12
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.93
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.49
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.48
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.98
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.29
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.80
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.53
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.27
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.96
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.65
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.06
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.01
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.10
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.65
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.41
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.29
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.41
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.48
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.26
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.69
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.34
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.98
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.88
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.75
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.54
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.37
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.70
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.30
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.71
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.65
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.54
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.32
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.04
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.86
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.53
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.49
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.44
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.08
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.73
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.62
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.34
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.34
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.84
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.82
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.45
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.35
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.24
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.72
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.64
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.06
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.77
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.88
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.57
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.84
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.42
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.38
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.12
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.96
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.40
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.34
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.80
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.20
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.83
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.96
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.84
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.