Gene detail

Detailed information of OS493_002647-T1 in Lophelia pertusa

Genomic Location: scaffold_5:5750116...5752043
NR annotation: KAJ7365916.1, Interferon-induced 6-16 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002003 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06140 all species →	Ifi-6-16	Interferon-induced 6-16 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009311 all species →	Family	Interferon alpha-inducible protein IFI6/IFI27-like	Interproscan
IPR038213 all species →	Homologous_superfamily	IFI6/IFI27-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16932 all species →	INTERFERON ALPHA-INDUCIBLE PROTEIN 27	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0097190 all species →	Biological Process	apoptotic signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26409	IFI27, ISG12; interferon alpha-inducible protein 27	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002647-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

153.4Max TPM

30.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	20.49	32.82
polyp at pH7 6	18	18	16.35	24.04
coral polyp · control treatment	16	16	46.31	104.40
coral polyp · oil and dispersant treatment	16	15	24.50	53.66
coral polyp · oil treatment	16	16	35.24	84.96
coral polyp · dispersant treatment	16	16	36.71	144.03
Polyp	10	10	37.44	153.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.82
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.65
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.30
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.10
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.89
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.58
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.27
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.96
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.85
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.82
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.52
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.70
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.96
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.57
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.71
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.04
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.38
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.56
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.37
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.33
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.84
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.77
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.89
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.78
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.75
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.64
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.95
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.68
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.14
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.45
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.40
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	98.14
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.79
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.43
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.39
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.53
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.22
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.73
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.53
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.66
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.51
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.65
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.70
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.35
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.30
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.29
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.41
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.32
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.51
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.96
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.52
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.99
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.49
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.77
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.35
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.20
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.82
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.52
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.45
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.61
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.82
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.89
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.45
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	144.03
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.53
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.90
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.30
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.66
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.47
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.21
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.77
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.03
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.46
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.30
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.75
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.13
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.73
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	153.38
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	41.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	34.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	28.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	26.73
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	25.26
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.36
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.84
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	19.39
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.60

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.