Detailed information of OS493_002650-T1 in Lophelia pertusa

Genomic Location: scaffold_5:5813342...5821904
NR annotation: KAJ7365919.1, snRNA metabolic process [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9VPY0Integrator complex subunit 14 OS=Drosophila melanogaster OX=7227 GN=IntS14 PE=1 SV=1
Q5ZK21Integrator complex subunit 14 OS=Gallus gallus OX=9031 GN=INTS14 PE=2 SV=1
Q66H58Integrator complex subunit 14 OS=Rattus norvegicus OX=10116 GN=Ints14 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008447 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20504
all species →		IntS14_CIntegrator complex subunit 14, alpha-helical domainDomainInterproscan
PF13855
all species →		LRR_8Leucine rich repeatRepeatInterproscan
PF00560
all species →		LRR_1Leucine Rich RepeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001611
all species →		RepeatLeucine-rich repeatInterproscan
IPR032675
all species →		Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR003591
all species →		RepeatLeucine-rich repeat, typical subtypeInterproscan
IPR039841
all species →		FamilyIntegrator complex subunit 14Interproscan
IPR046471
all species →		DomainIntegrator complex subunit 14, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13532
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0032039
all species →		Cellular Componentintegrator complexInterproscan
GO:0034472
all species →		Biological ProcesssnRNA 3'-end processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_002650-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_002650-T1 global co-expression network
TOP