Gene detail

Detailed information of OS493_002690-T1 in Lophelia pertusa

Genomic Location: scaffold_5:6423956...6439096
NR annotation: KAJ7365952.1, Angiogenic factor with G patch and FHA domains 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TN31	Angiogenic factor with G patch and FHA domains 1 OS=Mus musculus OX=10090 GN=Aggf1 PE=2 SV=1
Q8N302	Angiogenic factor with G patch and FHA domains 1 OS=Homo sapiens OX=9606 GN=AGGF1 PE=1 SV=2
Q9UKJ3	G patch domain-containing protein 8 OS=Homo sapiens OX=9606 GN=GPATCH8 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003847 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498 all species →	FHA	FHA domain	Family	Interproscan
PF01585 all species →	G-patch	G-patch domain	Family	Interproscan
PF17780 all species →	OCRE	OCRE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR053027 all species →	Family	Angiogenic factor with G patch and FHA domains 1	Interproscan
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR041591 all species →	Domain	OCRE domain	Interproscan
IPR035624 all species →	Domain	AGGF1, OCRE domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23106 all species →	ANGIOGENIC FACTOR WITH G PATCH AND FHA DOMAINS 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002690-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002690-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

26.2Max TPM

13.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.42	26.25
polyp at pH7 6	18	18	15.73	25.46
coral polyp · control treatment	16	16	13.49	20.66
coral polyp · oil and dispersant treatment	16	16	12.04	20.17
coral polyp · oil treatment	16	16	13.14	21.63
coral polyp · dispersant treatment	16	16	6.56	15.30
Polyp	10	10	14.21	21.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.72
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.31
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.29
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.62
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.22
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.51
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.99
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.50
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.20
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.92
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.54
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.70
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.44
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.46
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.47
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.42
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.93
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.74
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.09
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.57
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.27
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.23
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.54
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.57
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.89
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.88
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.63
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.97
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.54
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.66
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.76
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.64
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.13
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.56
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.45
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.94
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.62
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.23
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.16
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.42
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.61
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.06
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.28
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.08
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.82
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.52
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.59
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.40
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.12
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.29
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.63
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.27
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.73
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.45
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.90
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.86
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.21
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.92
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.51
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.46
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.81
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.41
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.30
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.51
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.76
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.47
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.21
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.31
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.17
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.79
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.95
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.76
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.75
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.73
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.53
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.22
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.08
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	20.46
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.77
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.32
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	14.77
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.05
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.11
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.16
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.17
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.19

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.