Gene detail

Detailed information of OS493_002763-T1 in Lophelia pertusa

Genomic Location: scaffold_6:34924...39089
NR annotation: KAJ7340040.1, hypothetical protein OS493_002763 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P52162	Protein max OS=Gallus gallus OX=9031 GN=MAX PE=3 SV=1
P61245	Protein max OS=Felis catus OX=9685 GN=MAX PE=2 SV=1
P61244	Protein max OS=Homo sapiens OX=9606 GN=MAX PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002681 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10328 all species →	PROTEIN MAX MYC-ASSOCIATED FACTOR X	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0090575 all species →	Cellular Component	RNA polymerase II transcription regulator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04453	MAX; Max protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002763-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

71.2Max TPM

36.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	34.45	50.45
polyp at pH7 6	18	18	30.99	41.94
coral polyp · control treatment	16	16	39.58	66.69
coral polyp · oil and dispersant treatment	16	16	42.43	71.21
coral polyp · oil treatment	16	16	33.92	52.74
coral polyp · dispersant treatment	16	16	41.57	62.70
Polyp	10	10	28.41	49.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.45
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.16
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.55
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.44
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.97
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.04
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.51
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.11
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.30
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.21
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.94
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.46
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.94
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.48
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.46
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.08
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.98
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.49
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.83
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.27
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.69
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.65
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.35
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.24
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.14
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.69
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.58
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.06
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.17
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.92
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.39
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.42
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.38
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.54
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.63
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.80
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.93
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.21
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.92
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.10
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.31
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.84
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.77
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.21
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.80
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.20
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.74
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.64
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.66
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.88
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.39
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.23
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.03
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.97
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.58
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.61
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.33
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.37
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.70
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.52
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.11
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.09
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.03
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.81
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.68
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.63
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.37
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.84
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.25
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	49.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	36.25
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	35.37
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	34.54
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	34.47
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	30.70
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	24.96
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.46
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.18

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.