Gene detail

Detailed information of OS493_002764-T1 in Lophelia pertusa

Genomic Location: scaffold_6:42454...51998
NR annotation: KAJ7340041.1, Serine/threonine-protein phosphatase 5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NES8	Serine/threonine-protein phosphatase 5 OS=Caenorhabditis elegans OX=6239 GN=pph-5 PE=1 SV=2
P53041	Serine/threonine-protein phosphatase 5 OS=Homo sapiens OX=9606 GN=PPP5C PE=1 SV=1
Q60676	Serine/threonine-protein phosphatase 5 OS=Mus musculus OX=10090 GN=Ppp5c PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004623 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF08321 all species →	PPP5	PPP5 TPR repeat region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR006186 all species →	Domain	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR051134 all species →	Family	Protein Phosphatase PPP	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR041753 all species →	Domain	PP5, C-terminal metallophosphatase domain	Interproscan
IPR013235 all species →	Domain	PPP domain	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45668 all species →	SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04460	PPP5C; serine/threonine-protein phosphatase 5	EC:3.1.3.16	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002764-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

29.7Max TPM

9.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.17	13.29
polyp at pH7 6	18	18	10.50	18.25
coral polyp · control treatment	16	16	12.38	27.24
coral polyp · oil and dispersant treatment	16	16	11.91	29.69
coral polyp · oil treatment	16	16	11.08	19.69
coral polyp · dispersant treatment	16	16	5.98	14.42
Polyp	10	10	10.71	21.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.29
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.58
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.72
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.22
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.57
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.81
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.21
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.83
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.65
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.71
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.04
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.87
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.25
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.67
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.87
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.84
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.17
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.84
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.32
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.21
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.88
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.27
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.52
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.31
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.24
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.09
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.01
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.02
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.86
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.57
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.78
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.58
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.14
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.88
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.36
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.24
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.18
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.06
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.90
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.71
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.15
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.01
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.13
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.41
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.33
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.33
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.61
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.94
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.39
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.59
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.78
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.49
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.64
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.99
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.34
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.61
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.86
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.54
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.42
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.10
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.76
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.96
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.26
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.09
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.07
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.59
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.39
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	21.97
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.16
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.63
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.72
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.89
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.57

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.