Gene detail

Detailed information of OS493_002774-T1 in Lophelia pertusa

Genomic Location: scaffold_6:147708...159462
NR annotation: KAJ7340051.1, hypothetical protein OS493_002774 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P24280	SEC14 cytosolic factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SEC14 PE=1 SV=3
Q75DK1	SEC14 cytosolic factor OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=SEC14 PE=3 SV=2
Q10137	Sec14 cytosolic factor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sec14 PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008587 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00650 all species →	CRAL_TRIO	CRAL/TRIO domain	Domain	Interproscan
PF03765 all species →	CRAL_TRIO_N	CRAL/TRIO, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001251 all species →	Domain	CRAL-TRIO lipid binding domain	Interproscan
IPR036865 all species →	Homologous_superfamily	CRAL-TRIO lipid binding domain superfamily	Interproscan
IPR036273 all species →	Homologous_superfamily	CRAL/TRIO, N-terminal domain superfamily	Interproscan
IPR051026 all species →	Family	Phosphatidylinositol/phosphatidylcholine transfer	Interproscan
IPR011074 all species →	Domain	CRAL/TRIO, N-terminal domain	Interproscan
IPR036598 all species →	Homologous_superfamily	GOLD domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45657 all species →	CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_002774-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26544	SEC14, SEC14L; phosphatidylinositol/phosphatidylcholine transfer protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002774-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

9.5Max TPM

3.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.66	6.12
polyp at pH7 6	18	14	2.37	5.66
coral polyp · control treatment	16	16	4.89	9.46
coral polyp · oil and dispersant treatment	16	16	2.79	6.67
coral polyp · oil treatment	16	16	3.25	7.45
coral polyp · dispersant treatment	16	16	4.33	7.72
Polyp	10	8	1.82	3.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.12
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.11
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.80
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.78
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.51
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.92
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.67
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.10
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.60
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.51
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.40
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.66
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.69
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.65
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.25
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.17
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.87
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.36
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.21
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.86
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.12
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.46
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.15
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.32
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.98
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.38
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.99
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.95
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.32
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.58
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.87
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.50
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.67
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.18
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.16
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.57
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.45
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.13
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.93
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.99
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.20
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.78
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.45
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.63
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.99
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.72
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.16
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.09
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.07
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.03
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.01
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.24
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.86
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.72
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.67
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.45
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.73
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.52
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.08
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.30
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.69
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.62
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.28
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.68
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.97
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.30
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.99
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.09
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.02
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.40
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.27
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.