Gene detail

Detailed information of OS493_002777-T1 in Lophelia pertusa

Genomic Location: scaffold_6:215565...225223
NR annotation: KAJ7340054.1, Transmembrane protein 87A [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BKU8	Transmembrane protein 87B OS=Mus musculus OX=10090 GN=Tmem87b PE=2 SV=1
Q96K49	Transmembrane protein 87B OS=Homo sapiens OX=9606 GN=TMEM87B PE=1 SV=1
Q28EW0	Transmembrane protein 87A OS=Xenopus tropicalis OX=8364 GN=tmem87a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003107 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06814 all species →	Lung_7-TM_R	Lung seven transmembrane receptor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009637 all species →	Family	Transmembrane protein GPR107/GPR108-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21229 all species →	LUNG SEVEN TRANSMEMBRANE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002777-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002777-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

72.0Max TPM

26.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.18	30.55
polyp at pH7 6	18	18	18.36	27.67
coral polyp · control treatment	16	16	36.59	72.02
coral polyp · oil and dispersant treatment	16	16	40.80	60.13
coral polyp · oil treatment	16	16	28.03	55.66
coral polyp · dispersant treatment	16	16	30.25	43.08
Polyp	10	9	11.07	20.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.55
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.39
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.25
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.36
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.31
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.69
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.60
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.65
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.56
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.61
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.01
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.67
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.37
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.09
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.96
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.15
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.47
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.42
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.02
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.98
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.87
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.24
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.10
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.92
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.24
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.69
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.58
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.84
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.02
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.26
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.39
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.39
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.31
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.66
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.38
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.42
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.69
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.15
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.90
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.30
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.21
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.10
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.13
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.13
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.96
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.35
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.83
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.08
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.02
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.66
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.58
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.11
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.29
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.35
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.80
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.66
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.73
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.26
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.01
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.49
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.03
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.95
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.16
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.54
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.97
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.08
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.27
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.08
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.99
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.19
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.81
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.52
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.91
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.16
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.60
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	20.94
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.51
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	14.56
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.04
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.86
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.