Gene detail

Detailed information of OS493_002855-T1 in Lophelia pertusa

Genomic Location: scaffold_6:1129416...1131420
NR annotation: KAJ7340129.1, hypothetical protein OS493_002855 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P829	Nitric oxide synthase-interacting protein OS=Xenopus tropicalis OX=8364 GN=nosip PE=2 SV=1
Q6NUH3	Nitric oxide synthase-interacting protein OS=Xenopus laevis OX=8355 GN=nosip PE=2 SV=1
Q3SWY5	Nitric oxide synthase-interacting protein OS=Bos taurus OX=9913 GN=NOSIP PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008099 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04641 all species →	Rtf2	Rtf2 RING-finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016818 all species →	Family	Nitric oxide synthase-interacting protein	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13063 all species →	ENOS INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002855-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002855-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

36.6Max TPM

13.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.23	19.52
polyp at pH7 6	18	18	13.98	20.50
coral polyp · control treatment	16	16	14.31	36.30
coral polyp · oil and dispersant treatment	16	16	14.35	36.57
coral polyp · oil treatment	16	16	13.80	20.20
coral polyp · dispersant treatment	16	16	7.57	13.06
Polyp	10	10	15.33	24.23

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.66
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.07
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.40
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.84
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.35
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.80
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.51
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.38
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.36
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.97
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.54
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.67
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.16
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.07
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.98
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.88
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.50
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.27
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.12
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.69
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.38
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.35
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.89
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.55
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.09
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.15
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.65
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.61
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.85
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.60
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.45
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.68
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.18
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.71
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.23
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.50
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.75
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.56
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.61
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.57
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.28
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.62
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.32
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.68
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.81
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.41
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.49
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.14
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.74
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.80
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.14
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.20
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.71
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.51
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.08
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.62
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.58
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.40
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.67
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.30
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.16
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.71
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.06
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.45
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.16
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.10
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.69
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.11
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.60
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.59
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.45
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	24.23
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	22.43
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.50
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.98
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.88
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.79
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.50
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.01
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.99

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.