Gene detail

Detailed information of OS493_002869-T1 in Lophelia pertusa

Genomic Location: scaffold_6:1555441...1561657
NR annotation: KAJ7340142.1, GPN-loop GTPase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HCN4	GPN-loop GTPase 1 OS=Homo sapiens OX=9606 GN=GPN1 PE=1 SV=1
Q8VCE2	GPN-loop GTPase 1 OS=Mus musculus OX=10090 GN=Gpn1 PE=1 SV=1
A4FUD1	GPN-loop GTPase 1 OS=Bos taurus OX=9913 GN=GPN1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007487 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03029 all species →	ATP_bind_1	Conserved hypothetical ATP binding protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030230 all species →	Family	GPN-loop GTPase 1	Interproscan
IPR004130 all species →	Family	GPN-loop GTPase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21231 all species →	XPA-BINDING PROTEIN 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24104	GPN; GPN-loop GTPase	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002869-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

41.0Max TPM

22.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.22	30.85
polyp at pH7 6	18	18	22.64	35.31
coral polyp · control treatment	16	16	26.32	40.80
coral polyp · oil and dispersant treatment	16	16	20.26	37.30
coral polyp · oil treatment	16	16	24.51	34.79
coral polyp · dispersant treatment	16	16	14.83	27.76
Polyp	10	10	26.61	41.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.85
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.22
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.63
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.04
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.87
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.55
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.35
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.24
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.20
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.06
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.82
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.60
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.26
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.96
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.51
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.63
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.38
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.91
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.13
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.84
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.30
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.03
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.99
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.93
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.34
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.76
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.54
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.22
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.84
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.01
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.63
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.85
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.09
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.66
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.66
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.54
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.63
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.03
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.66
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.77
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.30
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.48
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.77
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.92
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.64
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.18
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.75
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.62
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.24
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.48
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.44
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.47
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.31
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.02
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.49
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.61
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.54
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.46
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.72
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.49
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.93
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.55
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.36
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.76
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.84
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.47
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.31
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.84
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.70
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.56
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.14
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.14
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.56
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.21
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.57
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.70
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.12
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	41.04
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	34.11
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	32.03
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	27.55
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	26.91
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	24.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.70
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	20.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.73

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.