Gene detail

Detailed information of OS493_002873-T1 in Lophelia pertusa

Genomic Location: scaffold_6:1591493...1592728
NR annotation: KAJ7340146.1, Inward rectifier potassium channel [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92806	G protein-activated inward rectifier potassium channel 3 OS=Homo sapiens OX=9606 GN=KCNJ9 PE=1 SV=2
P48543	G protein-activated inward rectifier potassium channel 3 OS=Mus musculus OX=10090 GN=Kcnj9 PE=1 SV=2
Q63511	G protein-activated inward rectifier potassium channel 3 OS=Rattus norvegicus OX=10116 GN=Kcnj9 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001013 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01007 all species →	IRK	Inward rectifier potassium channel transmembrane domain	Domain	Interproscan
PF17655 all species →	IRK_C	Inward rectifier potassium channel C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013518 all species →	Homologous_superfamily	Potassium channel, inwardly rectifying, Kir, cytoplasmic	Interproscan
IPR016449 all species →	Family	Potassium channel, inwardly rectifying, Kir	Interproscan
IPR040445 all species →	Domain	Potassium channel, inwardly rectifying, transmembrane domain	Interproscan
IPR041647 all species →	Domain	Inward rectifier potassium channel, C-terminal	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11767 all species →	INWARD RECTIFIER POTASSIUM CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005242 all species →	Molecular Function	inward rectifier potassium channel activity	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0034765 all species →	Biological Process	regulation of monoatomic ion transmembrane transport	Interproscan
GO:1990573 all species →	Biological Process	potassium ion import across plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002873-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002873-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

349.4Max TPM

70.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	24.61	29.82
polyp at pH7 6	18	18	29.80	39.78
coral polyp · control treatment	16	16	63.56	153.02
coral polyp · oil and dispersant treatment	16	16	83.03	119.32
coral polyp · oil treatment	16	16	65.90	114.46
coral polyp · dispersant treatment	16	16	190.71	349.36
Polyp	10	10	29.26	57.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.82
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.22
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.98
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.81
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.42
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.02
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.19
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.05
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.27
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.40
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.93
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.65
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.58
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.38
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.83
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.88
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.05
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.54
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.21
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.17
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.58
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.36
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.24
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.20
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.04
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.97
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.57
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.98
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	153.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.66
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.06
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.46
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.92
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.15
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.88
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.89
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.68
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.23
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.70
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.20
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.68
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	119.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.85
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	116.11
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	109.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	109.18
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	96.09
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.71
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.65
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.64
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.28
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	114.46
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	101.68
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.37
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.47
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.20
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.21
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.56
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.61
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.87
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.40
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.22
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.57
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.06
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.69
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	349.36
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	346.92
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	302.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	253.46
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	250.61
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	234.03
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	179.14
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	177.95
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	174.10
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	155.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	130.70
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	114.54
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	112.31
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	100.62
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	57.43
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	39.08
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	37.80
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	34.76
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.46
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	22.91
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	20.94
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.55
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.86
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.82

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.