Detailed information of OS493_002877-T1 in Lophelia pertusa

Genomic Location: scaffold_6:1612012...1648306
NR annotation: KAJ7340150.1, hypothetical protein OS493_002877 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P5D8Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Mus musculus OX=10090 GN=Smchd1 PE=1 SV=2
A6NHR9Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SMCHD1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006187 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13589
all species →		HATPase_c_3Histidine kinase-, DNA gyrase B-, and HSP90-like ATPaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR038892
all species →		FamilyStructural maintenance of chromosomes flexible hinge domain-containing protein 1Interproscan
IPR036890
all species →		Homologous_superfamilyHistidine kinase/HSP90-like ATPase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22640
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006302
all species →		Biological Processdouble-strand break repairInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23113SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1-DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_002877-T1 global co-expression network
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