Gene detail

Detailed information of OS493_002887-T1 in Lophelia pertusa

Genomic Location: scaffold_6:1799943...1809348
NR annotation: KAJ7340160.1, hypothetical protein OS493_002887 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P16065	Speract receptor OS=Strongylocentrotus purpuratus OX=7668 PE=2 SV=1
P11528	Resact receptor OS=Arbacia punctulata OX=7641 PE=1 SV=1
Q7XP59	Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLR3.1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000156 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan
IPR052612 all species →	Family	Atrial Natriuretic Peptide Clearance Receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44755 all species →	NATRIURETIC PEPTIDE RECEPTOR 3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0017046 all species →	Molecular Function	peptide hormone binding	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002887-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002887-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

127.7Max TPM

28.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.85	15.16
polyp at pH7 6	18	18	11.03	19.51
coral polyp · control treatment	16	16	26.71	80.86
coral polyp · oil and dispersant treatment	16	16	60.70	127.67
coral polyp · oil treatment	16	16	30.00	68.40
coral polyp · dispersant treatment	16	16	51.59	93.89
Polyp	10	9	5.21	10.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.16
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.01
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.14
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.06
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.80
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.60
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.30
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.24
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.24
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.95
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.13
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.72
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.17
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.04
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.89
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.76
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.83
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.33
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.52
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.76
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.55
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.25
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.37
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.04
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.94
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.37
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.30
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.53
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.95
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.49
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.91
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.54
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.86
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.32
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.48
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.06
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.74
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.34
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.58
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.55
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.91
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.88
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.56
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.80
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.75
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.88
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	127.67
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	116.95
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.61
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.26
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.08
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.40
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.53
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.16
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.11
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.39
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.26
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.32
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.56
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.89
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.67
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.98
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.63
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.10
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.41
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.10
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.96
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.78
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.72
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.43
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.93
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.73
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.15
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.44
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	93.89
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	89.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.28
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.94
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.84
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.02
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.28
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.92
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.78
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.68
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.87
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.82
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.88
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.98
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.26
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.69
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.83
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.35
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.87
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.08
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.