Gene detail

Detailed information of OS493_002890-T1 in Lophelia pertusa

Genomic Location: scaffold_6:1861605...1862039
NR annotation: KAJ7340162.1, hypothetical protein OS493_002890 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07553	Guanylate cyclase 32E OS=Drosophila melanogaster OX=7227 GN=Gyc32E PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000156 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan
IPR052612 all species →	Family	Atrial Natriuretic Peptide Clearance Receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44755 all species →	NATRIURETIC PEPTIDE RECEPTOR 3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0017046 all species →	Molecular Function	peptide hormone binding	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002890-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002890-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

7.5Max TPM

2.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	1.83	4.76
polyp at pH7 6	18	17	2.14	5.08
coral polyp · control treatment	16	16	2.67	5.86
coral polyp · oil and dispersant treatment	16	15	1.72	3.16
coral polyp · oil treatment	16	15	2.44	5.20
coral polyp · dispersant treatment	16	16	3.15	7.48
Polyp	10	8	0.36	1.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.76
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.84
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.87
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.49
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.31
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.74
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.66
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.16
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.95
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.06
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.86
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.79
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.82
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.59
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.49
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.17
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.04
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.78
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.44
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.32
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.15
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.03
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.02
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.22
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.33
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.25
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.58
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.41
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.73
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.61
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.44
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.02
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.99
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.73
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.33
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.16
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.11
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.93
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.73
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.60
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.85
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.64
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.43
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.10
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.07
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.80
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.23
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.94
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.71
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.16
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.12
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.53
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.41
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.33
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.30
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.88
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.36
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.22
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.72
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.48
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.09
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.80
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.37
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.15
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.98
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.71
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.01
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.62
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.25
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.83
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.45
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.96
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.25
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.23
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.18
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.