Gene detail

Detailed information of OS493_002899-T1 in Lophelia pertusa

Genomic Location: scaffold_6:1981887...1982789
NR annotation: KAJ7340170.1, DCN1-like protein 3 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V8B2	DCN1-like protein 3 OS=Rattus norvegicus OX=10116 GN=Dcun1d3 PE=2 SV=1
Q8IWE4	DCN1-like protein 3 OS=Homo sapiens OX=9606 GN=DCUN1D3 PE=1 SV=1
Q8K0V2	DCN1-like protein 3 OS=Mus musculus OX=10090 GN=Dcun1d3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010109 (this species only)
Ubiquitin family	E3\|E3 activity\|DCUN1 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03556 all species →	Cullin_binding	Cullin binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005176 all species →	Domain	Potentiating neddylation domain	Interproscan
IPR014764 all species →	Family	Defective-in-cullin neddylation protein	Interproscan
IPR042460 all species →	Homologous_superfamily	DCN1-like, PONY binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12281 all species →	RP42 RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032182 all species →	Molecular Function	ubiquitin-like protein binding	Interproscan
GO:0045116 all species →	Biological Process	protein neddylation	Interproscan
GO:0097602 all species →	Molecular Function	cullin family protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17823	DCUN1D3; DCN1-like protein 3	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_002899-T1 global co-expression network