Gene detail

Detailed information of OS493_002914-T1 in Lophelia pertusa

Genomic Location: scaffold_6:2170876...2178178
NR annotation: KAJ7340184.1, Nucleotide-binding protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7SE07	Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Nematostella vectensis OX=45351 GN=v1g229988 PE=3 SV=1
Q5ZKV4	Cytosolic Fe-S cluster assembly factor NUBP2 OS=Gallus gallus OX=9031 GN=NUBP2 PE=2 SV=1
Q6DEE4	Cytosolic Fe-S cluster assembly factor nubp2 OS=Xenopus laevis OX=8355 GN=nubp2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001354 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10609 all species →	ParA	NUBPL iron-transfer P-loop NTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033756 all species →	Family	Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35	Interproscan
IPR019591 all species →	Family	Mrp/NBP35 ATP-binding protein	Interproscan
IPR028600 all species →	Family	Cytosolic Fe-S cluster assembly factor NUBP2/Cfd1, eukaryotes	Interproscan
IPR000808 all species →	Conserved_site	Iron-sulfur cluster carrier protein-like, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23264 all species →	NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016226 all species →	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0140663 all species →	Molecular Function	ATP-dependent FeS chaperone activity	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03593	mrp, NUBPL; ATP-binding protein involved in chromosome partitioning	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002914-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

48.3Max TPM

16.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.63	17.78
polyp at pH7 6	18	18	13.49	20.88
coral polyp · control treatment	16	16	19.71	30.44
coral polyp · oil and dispersant treatment	16	16	28.21	48.32
coral polyp · oil treatment	16	16	17.05	26.92
coral polyp · dispersant treatment	16	16	11.50	29.78
Polyp	10	10	11.14	17.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.78
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.36
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.35
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.79
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.61
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.94
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.21
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.93
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.57
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.51
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.92
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.27
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.98
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.19
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.09
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.88
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.64
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.28
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.40
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.19
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.13
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.94
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.64
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.41
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.17
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.14
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.05
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.04
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.81
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.44
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.22
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.16
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.77
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.51
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.34
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.12
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.75
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.51
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.30
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.72
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.49
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.73
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.97
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.13
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.35
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.87
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.96
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.84
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.69
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.69
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.51
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.92
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.97
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.88
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.64
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.57
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.57
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.74
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.50
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.04
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.62
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.14
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.57
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.14
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.90
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.78
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.80
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.70
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.50
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.35
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.30
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.90
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.14
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.02
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.49
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.01
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.59
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.79
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.41
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.43
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	15.96
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.81
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.04
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.31
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.66
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.52
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.47
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.