Gene detail

Detailed information of OS493_002953-T1 in Lophelia pertusa

Genomic Location: scaffold_6:2624806...2635619
NR annotation: KAJ7340221.1, hypothetical protein OS493_002953 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0C1S9	Diacylglycerol lipase-beta OS=Rattus norvegicus OX=10116 GN=Daglb PE=1 SV=1
Q8NCG7	Diacylglycerol lipase-beta OS=Homo sapiens OX=9606 GN=DAGLB PE=1 SV=2
Q91WC9	Diacylglycerol lipase-beta OS=Mus musculus OX=10090 GN=Daglb PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001618 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01764 all species →	Lipase_3	Lipase (class 3)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002921 all species →	Domain	Fungal lipase-like domain	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR052214 all species →	Family	Diacylglycerol Lipase-Related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45792 all species →	DIACYLGLYCEROL LIPASE HOMOLOG-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0016042 all species →	Biological Process	lipid catabolic process	Interproscan
GO:0016298 all species →	Molecular Function	lipase activity	Interproscan
GO:0019369 all species →	Biological Process	arachidonate metabolic process	Interproscan
GO:0046340 all species →	Biological Process	diacylglycerol catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002953-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002953-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

31.2Max TPM

13.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.75	23.27
polyp at pH7 6	18	18	12.53	17.45
coral polyp · control treatment	16	16	18.04	31.20
coral polyp · oil and dispersant treatment	16	16	13.08	19.32
coral polyp · oil treatment	16	16	16.47	24.20
coral polyp · dispersant treatment	16	16	10.06	15.68
Polyp	10	9	7.05	17.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.27
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.91
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.65
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.39
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.21
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.80
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.81
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.66
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.49
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.63
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.53
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.53
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.85
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.73
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.10
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.45
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.85
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.43
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.25
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.04
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.36
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.67
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.35
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.73
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.51
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.30
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.11
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.40
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.27
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.62
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.81
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.20
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.18
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.79
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.37
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.19
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.94
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.60
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.37
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.69
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.82
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.53
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.27
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.21
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.32
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.10
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.70
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.62
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.40
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.99
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.91
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.77
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.45
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.97
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.39
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.22
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.15
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.40
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.65
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.35
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.32
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.48
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.67
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.60
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.35
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.18
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.73
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.25
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.94
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.89
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.45
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.65
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.59
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.93
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.91
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.36
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.22
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.76
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.21
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.03
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.86
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.40
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.57
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.54
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.80
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.14
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.71
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.65
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.52
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.30
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.