Gene detail

Detailed information of OS493_002955-T1 in Lophelia pertusa

Genomic Location: scaffold_6:2639226...2646488
NR annotation: KAJ7340223.1, hypothetical protein OS493_002955 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91WC9	Diacylglycerol lipase-beta OS=Mus musculus OX=10090 GN=Daglb PE=1 SV=2
Q9Y4D2	Diacylglycerol lipase-alpha OS=Homo sapiens OX=9606 GN=DAGLA PE=1 SV=3
Q6WQJ1	Diacylglycerol lipase-alpha OS=Mus musculus OX=10090 GN=Dagla PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001635 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_002955-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR052214 all species →	Family	Diacylglycerol Lipase-Related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45792 all species →	DIACYLGLYCEROL LIPASE HOMOLOG-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016042 all species →	Biological Process	lipid catabolic process	Interproscan
GO:0016298 all species →	Molecular Function	lipase activity	Interproscan
GO:0019369 all species →	Biological Process	arachidonate metabolic process	Interproscan
GO:0046340 all species →	Biological Process	diacylglycerol catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002955-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002955-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

23.9Max TPM

8.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.77	12.18
polyp at pH7 6	18	18	7.06	13.32
coral polyp · control treatment	16	16	12.62	23.92
coral polyp · oil and dispersant treatment	16	16	9.96	13.52
coral polyp · oil treatment	16	16	10.56	17.76
coral polyp · dispersant treatment	16	16	8.47	14.04
Polyp	10	9	3.00	6.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.18
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.93
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.92
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.39
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.88
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.84
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.85
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.57
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.85
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.57
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.45
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.24
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.67
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.55
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.42
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.68
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.19
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.80
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.86
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.95
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.20
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.12
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.94
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.21
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.10
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.09
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.07
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.52
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.92
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.40
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.39
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.18
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.31
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.04
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.40
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.43
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.35
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.81
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.41
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.52
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.90
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.34
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.22
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.10
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.81
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.65
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.98
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.94
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.06
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.22
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.76
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.25
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.88
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.73
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.97
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.78
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.12
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.63
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.06
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.91
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.48
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.16
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.31
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.04
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.84
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.07
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.92
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.43
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.99
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.39
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.38
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.64
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.54
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.86
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.40
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.37
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.26
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.39
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.04
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.74
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.71
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.