Gene detail

Detailed information of OS493_002961-T1 in Lophelia pertusa

Genomic Location: scaffold_6:2709426...2717507
NR annotation: KAJ7340229.1, hypothetical protein OS493_002961 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z0L8	Gamma-glutamyl hydrolase OS=Mus musculus OX=10090 GN=Ggh PE=1 SV=2
Q92820	Gamma-glutamyl hydrolase OS=Homo sapiens OX=9606 GN=GGH PE=1 SV=2
Q62867	Gamma-glutamyl hydrolase OS=Rattus norvegicus OX=10116 GN=Ggh PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000654 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07722 all species →	Peptidase_C26	Peptidase C26	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015527 all species →	Family	Peptidase C26, gamma-glutamyl hydrolase	Interproscan
IPR011697 all species →	Family	Peptidase C26	Interproscan
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11315 all species →	PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005773 all species →	Cellular Component	vacuole	Interproscan
GO:0008242 all species →	Molecular Function	omega peptidase activity	Interproscan
GO:0034722 all species →	Molecular Function	gamma-glutamyl-peptidase activity	Interproscan
GO:0046900 all species →	Biological Process	tetrahydrofolylpolyglutamate metabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01307	GGH; gamma-glutamyl hydrolase	EC:3.4.19.9	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002961-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

315.8Max TPM

85.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	50.60	71.18
polyp at pH7 6	18	18	57.18	79.24
coral polyp · control treatment	16	16	92.99	163.00
coral polyp · oil and dispersant treatment	16	16	186.81	315.81
coral polyp · oil treatment	16	16	89.94	138.48
coral polyp · dispersant treatment	16	16	68.88	102.75
Polyp	10	10	44.25	111.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.18
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.98
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.31
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.95
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.13
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.16
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.26
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.08
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.03
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.87
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.12
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.38
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.61
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.14
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.06
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.24
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.69
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.59
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.38
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.56
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.99
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.96
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.14
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.27
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.98
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.60
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.87
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	163.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	136.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	133.87
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	111.15
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	108.57
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.40
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.44
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.81
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.49
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.38
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.03
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.82
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.89
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	315.81
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	283.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	271.56
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	229.99
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	228.64
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	219.85
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	214.13
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	203.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	170.66
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	156.69
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.73
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	146.22
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	129.65
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.90
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	138.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	119.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	114.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	110.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	101.24
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	99.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	99.46
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	97.20
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	95.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	93.64
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	91.48
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.49
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.08
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.69
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.79
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	96.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	89.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.44
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	85.02
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.96
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.85
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.92
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.02
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.25
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.38
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.13
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	111.27
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	63.59
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	56.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	44.24
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	39.63
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	38.05
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	31.81
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	24.99
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	19.69
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.95

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.