Gene detail

Detailed information of OS493_002964-T1 in Lophelia pertusa

Genomic Location: scaffold_6:2740335...2743653
NR annotation: KAJ7340232.1, Centromere protein X [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0DJH7	Centromere protein X OS=Gallus gallus OX=9031 GN=CENPX PE=1 SV=1
A8MT69	Centromere protein X OS=Homo sapiens OX=9606 GN=CENPX PE=1 SV=1
Q5RBU1	Centromere protein X OS=Pongo abelii OX=9601 GN=CENPX PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011444 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09415 all species →	CENP-X	CENP-S associating Centromere protein X	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018552 all species →	Family	Centromere protein X	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28680 all species →	CENTROMERE PROTEIN X	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0031297 all species →	Biological Process	replication fork processing	Interproscan
GO:0043240 all species →	Cellular Component	Fanconi anaemia nuclear complex	Interproscan
GO:0051382 all species →	Biological Process	kinetochore assembly	Interproscan
GO:0071821 all species →	Cellular Component	FANCM-MHF complex	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15360	STRA13, CENPX, MHF2; centromere protein X	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002964-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

86TPM > 0

7Conditions

78.7Max TPM

2.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	1.49	4.89
polyp at pH7 6	18	10	1.31	4.17
coral polyp · control treatment	16	14	4.27	50.16
coral polyp · oil and dispersant treatment	16	14	5.53	78.70
coral polyp · oil treatment	16	15	1.59	5.66
coral polyp · dispersant treatment	16	12	0.89	2.78
Polyp	10	8	4.04	14.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.89
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.79
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.54
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.14
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.08
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.77
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.37
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.33
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.76
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.70
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.63
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.98
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.95
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.43
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.31
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.83
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.12
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.87
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.66
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.61
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.58
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.54
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.43
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.85
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.30
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.70
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.13
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.75
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.46
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.39
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.37
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.33
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.66
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.17
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.98
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.72
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.71
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.60
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.54
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.20
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.13
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.89
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.65
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.40
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.78
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.13
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.58
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.51
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.65
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.26
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.70
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.14
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.22
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.94
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.