Gene detail

Detailed information of OS493_002974-T1 in Lophelia pertusa

Genomic Location: scaffold_6:2968502...2973776
NR annotation: KAJ7340242.1, Cerebellar deproteinration- protein 2-like [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZJA3	Cerebellar degeneration-related protein 2 OS=Gallus gallus OX=9031 GN=CDR2 PE=2 SV=1
P97817	Cerebellar degeneration-related protein 2 OS=Mus musculus OX=10090 GN=Cdr2 PE=1 SV=2
Q6NZT2	Cerebellar degeneration-related protein 2-like OS=Danio rerio OX=7955 GN=cdr2l PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006790 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_002974-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR026079 all species →	Family	Cerebellar degeneration-related protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19232 all species →	CENTROCORTIN FAMILY MEMBER	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_002974-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002974-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002974-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

16.9Max TPM

4.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.99	9.61
polyp at pH7 6	18	18	4.31	13.57
coral polyp · control treatment	16	16	5.34	9.27
coral polyp · oil and dispersant treatment	16	15	6.01	12.50
coral polyp · oil treatment	16	16	4.71	11.93
coral polyp · dispersant treatment	16	16	6.40	16.86
Polyp	10	10	2.00	3.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.61
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.30
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.25
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.30
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.08
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.07
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.06
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.93
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.39
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.35
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.22
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.13
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.89
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.57
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.37
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.94
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.99
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.87
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.80
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.69
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.67
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.63
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.50
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.47
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.35
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.18
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.27
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.41
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.84
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.80
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.99
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.02
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.23
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.14
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.04
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.75
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.52
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.50
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.20
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.71
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.27
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.04
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.52
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.36
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.71
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.67
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.55
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.90
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.35
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.15
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.79
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.93
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.43
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.50
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.49
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.45
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.98
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.77
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.73
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.48
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.22
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.09
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.86
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.71
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.03
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.51
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.39
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.90
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.07
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.86
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.54
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.36
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.32
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.14
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.55
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.42
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.74
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.78
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.45

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.