Detailed information of OS493_002997-T1 in Lophelia pertusa

Genomic Location: scaffold_6:3347415...3352828
NR annotation: KAJ7340265.1, tRNA splicing endonuclease 54 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005149 (this species only)

 Pfam domain
No Pfam domain signature was detected for OS493_002997-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR024337
all species →		FamilytRNA-splicing endonuclease, subunit Sen54Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21027
all species →		TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000214
all species →		Cellular ComponenttRNA-intron endonuclease complexInterproscan
GO:0000379
all species →		Biological ProcesstRNA-type intron splice site recognition and cleavageInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_002997-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_002997-T1 global co-expression network
TOP