Gene detail

Detailed information of OS493_003005-T1 in Lophelia pertusa

Genomic Location: scaffold_6:3548885...3555958
NR annotation: KAJ7340273.1, Lipase maturation factor 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3U3R4	Lipase maturation factor 1 OS=Mus musculus OX=10090 GN=Lmf1 PE=1 SV=1
Q96S06	Lipase maturation factor 1 OS=Homo sapiens OX=9606 GN=LMF1 PE=1 SV=1
Q0P5C0	Lipase maturation factor 1 OS=Bos taurus OX=9913 GN=LMF1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004032 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06762 all species →	LMF1	Lipase maturation factor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009613 all species →	Family	Lipase maturation factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14463 all species →	LIPASE MATURATION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0051604 all species →	Biological Process	protein maturation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23555	LMF1; lipase maturation factor 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003005-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

50.9Max TPM

4.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.25	3.96
polyp at pH7 6	18	16	2.11	6.07
coral polyp · control treatment	16	16	5.33	22.45
coral polyp · oil and dispersant treatment	16	15	3.19	10.20
coral polyp · oil treatment	16	16	6.82	19.57
coral polyp · dispersant treatment	16	16	2.75	6.26
Polyp	10	8	12.49	50.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.96
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.51
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.06
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.96
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.59
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.30
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.91
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.87
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.85
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.43
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.07
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.61
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.41
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.60
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.46
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.45
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.17
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.32
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.12
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.48
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.34
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.22
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.30
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.13
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.59
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.37
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.10
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.20
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.92
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.84
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.48
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.63
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.76
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.98
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.89
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.35
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.14
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.96
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.78
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.52
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.28
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.87
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.26
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.40
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.40
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.25
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.21
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.58
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.47
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.41
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.90
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.82
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.17
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.64
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.61
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.58
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.22
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	50.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	46.14
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.99
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.01
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.41
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.69
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.