Gene detail

Detailed information of OS493_003009-T1 in Lophelia pertusa

Genomic Location: scaffold_6:3609437...3613099
NR annotation: KAJ7340276.1, Lipase maturation factor 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96S06	Lipase maturation factor 1 OS=Homo sapiens OX=9606 GN=LMF1 PE=1 SV=1
Q0P5C0	Lipase maturation factor 1 OS=Bos taurus OX=9913 GN=LMF1 PE=2 SV=1
Q3U3R4	Lipase maturation factor 1 OS=Mus musculus OX=10090 GN=Lmf1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004032 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06762 all species →	LMF1	Lipase maturation factor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009613 all species →	Family	Lipase maturation factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14463 all species →	LIPASE MATURATION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0051604 all species →	Biological Process	protein maturation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003009-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003009-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

71TPM > 0

7Conditions

60.2Max TPM

3.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	4	0.53	3.29
polyp at pH7 6	18	4	0.97	7.00
coral polyp · control treatment	16	16	4.17	9.09
coral polyp · oil and dispersant treatment	16	14	2.22	6.56
coral polyp · oil treatment	16	16	4.75	13.39
coral polyp · dispersant treatment	16	12	1.92	4.00
Polyp	10	5	12.46	60.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.44
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.30
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.58
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.99
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.09
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.87
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.16
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.85
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.64
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.48
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.38
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.09
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.89
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.84
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.23
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.93
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.50
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.46
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.56
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.34
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.42
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.95
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.08
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.61
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.59
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.40
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.39
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.63
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.54
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.26
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.15
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.51
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.71
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.60
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.69
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.48
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.61
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	60.24
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	40.67
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	15.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.23
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.72
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.