Gene detail

Detailed information of OS493_003024-T1 in Lophelia pertusa

Genomic Location: scaffold_6:3880201...3892190
NR annotation: KAJ7340291.1, TRAFAC class myosin-kinesin ATPase super [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UKN7	Unconventional myosin-XV OS=Homo sapiens OX=9606 GN=MYO15A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003028 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00784 all species →	MyTH4	MyTH4 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051567 all species →	Family	Unconventional Myosin ATPase	Interproscan
IPR038185 all species →	Homologous_superfamily	MyTH4 domain superfamily	Interproscan
IPR000857 all species →	Domain	MyTH4 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22692 all species →	MYOSIN VII, XV	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003024-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003024-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

26.4Max TPM

11.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	9.51	16.14
polyp at pH7 6	18	16	9.67	15.60
coral polyp · control treatment	16	16	14.73	26.45
coral polyp · oil and dispersant treatment	16	16	11.39	18.46
coral polyp · oil treatment	16	16	10.24	19.33
coral polyp · dispersant treatment	16	16	15.91	23.78
Polyp	10	7	2.34	5.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.14
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.65
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.01
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.80
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.58
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.71
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.06
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.93
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.78
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.67
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.16
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.03
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.29
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.60
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.20
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.71
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.60
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.19
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.18
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.16
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.70
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.87
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.70
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.45
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.76
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.80
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.93
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.36
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.99
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.73
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.82
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.46
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.89
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.35
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.07
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.25
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.63
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.50
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.50
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.33
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.35
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.14
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.01
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.81
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.72
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.65
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.73
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.18
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.13
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.68
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.56
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.41
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.78
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.38
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.62
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.58
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.30
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.49
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.68
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.38
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.30
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.45
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.65
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.37
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.23
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.30
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.24
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.26
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.