Gene detail

Detailed information of OS493_003031-T1 in Lophelia pertusa

Genomic Location: scaffold_6:3906003...3915459
NR annotation: KAJ7340298.1, hypothetical protein OS493_003031 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QZZ4	Unconventional myosin-XV OS=Mus musculus OX=10090 GN=Myo15a PE=1 SV=2
Q9UKN7	Unconventional myosin-XV OS=Homo sapiens OX=9606 GN=MYO15A PE=1 SV=2
Q96JP2	Unconventional myosin-XVB OS=Homo sapiens OX=9606 GN=MYO15B PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003028 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00784 all species →	MyTH4	MyTH4 domain	Family	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR051567 all species →	Family	Unconventional Myosin ATPase	Interproscan
IPR000857 all species →	Domain	MyTH4 domain	Interproscan
IPR038185 all species →	Homologous_superfamily	MyTH4 domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22692 all species →	MYOSIN VII, XV	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003031-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003031-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

75.4Max TPM

39.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	41.87	63.72
polyp at pH7 6	18	18	39.36	52.68
coral polyp · control treatment	16	16	47.91	75.41
coral polyp · oil and dispersant treatment	16	16	39.49	59.95
coral polyp · oil treatment	16	16	38.40	62.33
coral polyp · dispersant treatment	16	16	41.04	52.26
Polyp	10	10	24.74	41.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.72
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.62
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.37
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.04
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.91
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.54
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.27
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.52
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.32
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.19
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.01
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.80
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.49
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.59
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.68
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.07
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.96
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.11
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.02
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.85
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.75
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.56
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.90
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.44
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.72
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.92
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.64
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.43
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.41
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.09
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.07
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.10
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.70
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.10
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.96
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.24
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.44
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.80
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.07
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.25
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.30
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.36
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.91
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.55
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.55
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.07
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.61
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.27
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.77
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.54
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.61
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.48
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.67
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.30
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.07
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.08
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.12
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.15
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.82
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.40
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.53
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.01
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.93
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.26
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.56
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.20
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.03
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.86
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.37
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.47
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.28
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.03
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.40
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.74
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.66
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.98
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	41.88
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	34.24
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	33.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	30.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	29.37
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	27.62
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	22.94
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.52
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.83
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.69

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.