Gene detail

Detailed information of OS493_003082-T1 in Lophelia pertusa

Genomic Location: scaffold_6:5021000...5021683
NR annotation: KAJ7340342.1, Mitochondrial cardiolipin hydrolase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8IW99	Mitochondrial cardiolipin hydrolase OS=Chlamydomonas reinhardtii OX=3055 GN=CHLREDRAFT_190403 PE=3 SV=1
Q28DT3	Mitochondrial cardiolipin hydrolase OS=Xenopus tropicalis OX=8364 GN=pld6 PE=2 SV=2
E2RD63	Mitochondrial cardiolipin hydrolase OS=Canis lupus familiaris OX=9615 GN=PLD6 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009669 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13091 all species →	PLDc_2	PLD-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051406 all species →	Family	Phospholipase D domain-containing protein	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR001736 all species →	Domain	Phospholipase D/Transphosphatidylase	Interproscan
IPR025202 all species →	Domain	Phospholipase D-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43856 all species →	CARDIOLIPIN HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016891 all species →	Molecular Function	RNA endonuclease activity, producing 5'-phosphomonoesters	Interproscan
GO:0034587 all species →	Biological Process	piRNA processing	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16862	PLD6; mitochondrial cardiolipin hydrolase	EC:3.1.4.-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003082-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

9.8Max TPM

1.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.35	6.05
polyp at pH7 6	18	16	2.08	3.90
coral polyp · control treatment	16	16	1.94	4.22
coral polyp · oil and dispersant treatment	16	16	1.86	9.77
coral polyp · oil treatment	16	16	2.13	4.50
coral polyp · dispersant treatment	16	14	0.95	2.18
Polyp	10	8	1.44	2.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.05
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.57
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.08
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.67
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.58
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.84
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.69
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.57
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.26
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.86
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.90
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.84
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.78
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.42
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.42
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.30
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.20
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.16
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.96
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.94
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.68
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.06
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.22
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.03
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.87
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.94
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.57
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.26
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.22
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.15
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.12
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.12
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.81
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.80
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.77
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.81
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.48
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.24
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.39
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.17
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.08
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.98
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.95
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.93
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.89
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.62
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.50
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.41
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.89
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.60
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.54
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.43
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.25
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.90
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.78
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.65
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.52
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.98
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.56
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.40
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.18
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.98
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.74
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.71
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.22
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.74
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.46
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.37
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.20
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.43
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.95
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.89
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.73
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.26
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.46
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.