Gene detail

Detailed information of OS493_003090-T1 in Lophelia pertusa

Genomic Location: scaffold_6:5145191...5162699
NR annotation: KAJ7340348.1, Desumoylating isopeptidase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CQT7	Desumoylating isopeptidase 1 OS=Mus musculus OX=10090 GN=Desi1 PE=1 SV=1
Q4KM30	Desumoylating isopeptidase 1 OS=Rattus norvegicus OX=10116 GN=Desi1 PE=2 SV=1
Q6ICB0	Desumoylating isopeptidase 1 OS=Homo sapiens OX=9606 GN=DESI1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003468 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05903 all species →	Peptidase_C97	PPPDE putative peptidase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042266 all species →	Homologous_superfamily	PPPDE peptidase domain superfamily	Interproscan
IPR008580 all species →	Domain	PPPDE peptidase domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12378 all species →	DESUMOYLATING ISOPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0070646 all species →	Biological Process	protein modification by small protein removal	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22762	DESI1, PPPDE2; desumoylating isopeptidase 1	EC:3.4.-.-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003090-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

121.7Max TPM

32.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.19	23.61
polyp at pH7 6	18	18	15.57	26.95
coral polyp · control treatment	16	16	29.55	58.71
coral polyp · oil and dispersant treatment	16	16	80.64	121.70
coral polyp · oil treatment	16	16	35.80	83.50
coral polyp · dispersant treatment	16	16	32.61	110.24
Polyp	10	9	17.86	33.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.78
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.13
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.86
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.98
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.63
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.62
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.39
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.30
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.53
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.08
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.57
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.21
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.95
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.99
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.64
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.26
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.37
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.97
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.61
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.98
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.11
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.66
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.91
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.68
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.55
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.71
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.28
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.97
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.70
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.20
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.67
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.50
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.43
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.38
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	121.70
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.71
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.42
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.51
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	102.03
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	100.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.12
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.17
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.82
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.02
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.51
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.76
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.45
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.89
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.58
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.12
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.81
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.09
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.68
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.87
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.92
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.67
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.85
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.10
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.39
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.27
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.08
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.16
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.66
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.37
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.29
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.24
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.04
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.69
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	33.98
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	33.92
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	31.21
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	15.06
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.67
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.33
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.67
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.66
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.