Gene detail

Detailed information of OS493_003093-T1 in Lophelia pertusa

Genomic Location: scaffold_6:5230659...5247636
NR annotation: KAJ7340350.1, cop9 signalosome complex subunit [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NRT5	COP9 signalosome complex subunit 1 OS=Xenopus laevis OX=8355 GN=csn1 PE=2 SV=1
Q13098	COP9 signalosome complex subunit 1 OS=Homo sapiens OX=9606 GN=GPS1 PE=1 SV=4
Q99LD4	COP9 signalosome complex subunit 1 OS=Mus musculus OX=10090 GN=Gps1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005173 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21151 all species →	CSN1_C	COP9 signalosome complex subunit 1, C-terminal helix	Domain	Interproscan
PF10602 all species →	RPN7	26S proteasome subunit RPN7	Repeat	Interproscan
PF01399 all species →	PCI	PCI domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048624 all species →	Domain	COP9 signalosome complex subunit 1, C-terminal helix	Interproscan
IPR045135 all species →	Domain	26S proteasome regulatory subunit Rpn7, N-terminal	Interproscan
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR019585 all species →	Family	26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14145 all species →	26S PROTESOME SUBUNIT 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008180 all species →	Cellular Component	COP9 signalosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12175	GPS1, COPS1, CSN1; COP9 signalosome complex subunit 1	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_003093-T1 global co-expression network