Gene detail

Detailed information of OS493_003170-T1 in Lophelia pertusa

Genomic Location: scaffold_6:6006626...6008696
NR annotation: KAJ7340424.1, hypothetical protein OS493_003170 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P56213	FAD-linked sulfhydryl oxidase ALR OS=Mus musculus OX=10090 GN=Gfer PE=1 SV=2
Q63042	FAD-linked sulfhydryl oxidase ALR OS=Rattus norvegicus OX=10116 GN=Gfer PE=1 SV=2
P55789	FAD-linked sulfhydryl oxidase ALR OS=Homo sapiens OX=9606 GN=GFER PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007415 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04777 all species →	Evr1_Alr	Erv1 / Alr family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017905 all species →	Domain	ERV/ALR sulfhydryl oxidase domain	Interproscan
IPR036774 all species →	Homologous_superfamily	ERV/ALR sulfhydryl oxidase domain superfamily	Interproscan
IPR039799 all species →	Family	Sulfhydryl oxidase ALR/ERV	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12645 all species →	ALR/ERV	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016972 all species →	Molecular Function	thiol oxidase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016971 all species →	Molecular Function	flavin-dependent sulfhydryl oxidase activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17783	ERV1, GFER, ALR; mitochondrial FAD-linked sulfhydryl oxidase	EC:1.8.3.2	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003170-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

29.9Max TPM

6.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	4.08	11.42
polyp at pH7 6	18	15	4.72	10.60
coral polyp · control treatment	16	16	7.14	29.88
coral polyp · oil and dispersant treatment	16	16	9.83	18.88
coral polyp · oil treatment	16	16	5.40	9.10
coral polyp · dispersant treatment	16	16	7.03	22.07
Polyp	10	9	4.01	8.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.42
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.34
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.95
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.84
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.23
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.21
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.08
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.92
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.60
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.42
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.27
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.11
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.05
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.81
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.07
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.84
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.62
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.88
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.97
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.50
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.23
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.90
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.84
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.32
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.61
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.57
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.42
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.88
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.98
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.97
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.11
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.82
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.54
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.10
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.25
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.09
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.00
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.62
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.07
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.31
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.10
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.24
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.61
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.55
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.06
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.29
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.15
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.68
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.46
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.07
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.65
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.85
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.70
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.93
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.37
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.43
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.10
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.77
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.76
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.29
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.96
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.43
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.29
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.83
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.81
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.59
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.35
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.28
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.