Gene detail

Detailed information of OS493_003186-T1 in Lophelia pertusa

Genomic Location: scaffold_6:6095288...6095827
NR annotation: KAJ7340438.1, hypothetical protein OS493_003186 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IH75	Autophagy-related protein 101 OS=Xenopus tropicalis OX=8364 GN=atg101 PE=2 SV=1
Q6DE58	Autophagy-related protein 101 OS=Xenopus laevis OX=8355 GN=atg101 PE=2 SV=1
Q2HJE0	Autophagy-related protein 101 OS=Bos taurus OX=9913 GN=ATG101 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009426 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07855 all species →	ATG101	Autophagy-related protein 101	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012445 all species →	Family	Autophagy-related protein 101	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13292 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000045 all species →	Biological Process	autophagosome assembly	Interproscan
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0006914 all species →	Biological Process	autophagy	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19730	ATG101; autophagy-related protein 101	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003186-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

14.7Max TPM

6.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.70	8.45
polyp at pH7 6	18	18	6.38	9.85
coral polyp · control treatment	16	16	9.56	13.68
coral polyp · oil and dispersant treatment	16	15	6.94	10.76
coral polyp · oil treatment	16	16	9.82	14.67
coral polyp · dispersant treatment	16	16	2.83	7.23
Polyp	10	10	6.51	11.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.45
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.35
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.29
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.75
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.73
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.16
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.58
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.52
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.50
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.15
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.84
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.48
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.37
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.77
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.55
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.22
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.96
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.86
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.69
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.69
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.78
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.76
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.11
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.06
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.04
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.68
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.04
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.88
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.01
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.53
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.70
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.06
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.11
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.93
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.76
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.23
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.50
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.34
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.87
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.71
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.43
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.21
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.19
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.14
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.77
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.66
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.84
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.55
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.74
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.20
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.90
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.58
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.52
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.74
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.63
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.23
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.85
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.95
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.01
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.19
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	11.16
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.38
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.21
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.18
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.63
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.53
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.50
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.81
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.13

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.