Detailed information of OS493_003196-T1 in Lophelia pertusa

Genomic Location: scaffold_6:6176781...6182674
NR annotation: KAJ7340448.1, hypothetical protein OS493_003196 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9W0T1Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster OX=7227 GN=E(bx) PE=1 SV=2
Q12830Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens OX=9606 GN=BPTF PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004592 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02791
all species →		DDTDDT domainFamilyInterproscan
PF15612
all species →		WHIM1WSTF, HB1, Itc1p, MBD9 motif 1MotifInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR038028
all species →		FamilyNucleosome-remodeling factor subunit BPTFInterproscan
IPR018501
all species →		DomainDDT domainInterproscan
IPR028942
all species →		DomainWHIM1 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45975
all species →		NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTFInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016589
all species →		Cellular ComponentNURF complexInterproscan
GO:0035064
all species →		Molecular Functionmethylated histone bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_003196-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_003196-T1 global co-expression network
TOP