Gene detail

Detailed information of OS493_003211-T1 in Lophelia pertusa

Genomic Location: scaffold_6:6446330...6454219
NR annotation: KAJ7340463.1, Forkhead box protein K2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P42128	Forkhead box protein K1 OS=Mus musculus OX=10090 GN=Foxk1 PE=1 SV=2
P85037	Forkhead box protein K1 OS=Homo sapiens OX=9606 GN=FOXK1 PE=1 SV=1
Q7ZX03	Forkhead box protein K2 OS=Xenopus laevis OX=8355 GN=foxk2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007958 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498 all species →	FHA	FHA domain	Family	Interproscan
PF00250 all species →	Forkhead	Forkhead domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR001766 all species →	Domain	Fork head domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR030456 all species →	Conserved_site	Fork head domain conserved site 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45881 all species →	CHECKPOINT SUPPRESSOR 1-LIKE, ISOFORM A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09404	FOXK; forkhead box protein K	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003211-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

58.6Max TPM

17.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.03	23.71
polyp at pH7 6	18	18	14.05	21.89
coral polyp · control treatment	16	16	23.68	58.60
coral polyp · oil and dispersant treatment	16	16	22.84	35.85
coral polyp · oil treatment	16	16	20.01	32.18
coral polyp · dispersant treatment	16	16	20.49	31.07
Polyp	10	10	6.57	14.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.71
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.40
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.48
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.66
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.56
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.88
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.88
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.65
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.47
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.33
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.17
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.55
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.40
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.28
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.89
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.76
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.20
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.47
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.35
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.62
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.31
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.70
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.64
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.26
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.38
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.16
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.22
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.60
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.58
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.80
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.98
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.94
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.92
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.83
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.79
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.75
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.85
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.59
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.13
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.86
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.59
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.37
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.38
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.92
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.44
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.18
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.90
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.32
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.22
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.93
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.05
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.26
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.35
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.33
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.17
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.55
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.43
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.52
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.95
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.58
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.19
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.46
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.72
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.27
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.33
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.32
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.41
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.57
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.40
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.03
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.79
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.21
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.65
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.33
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.79
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.18

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.