Gene detail

Detailed information of OS493_003262-T1 in Lophelia pertusa

Genomic Location: scaffold_6:7020404...7031569
NR annotation: KAJ7340510.1, hypothetical protein OS493_003262 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O89035	Mitochondrial dicarboxylate carrier OS=Rattus norvegicus OX=10116 GN=Slc25a10 PE=2 SV=1
Q9UBX3	Mitochondrial dicarboxylate carrier OS=Homo sapiens OX=9606 GN=SLC25A10 PE=1 SV=2
G5EE96	Mitochondrial dicarboxylate carrier OS=Caenorhabditis elegans OX=6239 GN=slc-25a10 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001421 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR050391 all species →	Family	Mitochondrial Metabolite Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45618 all species →	MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008272 all species →	Biological Process	obsolete sulfate transport	Interproscan
GO:0015116 all species →	Molecular Function	sulfate transmembrane transporter activity	Interproscan
GO:0015117 all species →	Molecular Function	thiosulfate transmembrane transporter activity	Interproscan
GO:0015131 all species →	Molecular Function	oxaloacetate transmembrane transporter activity	Interproscan
GO:0015140 all species →	Molecular Function	malate transmembrane transporter activity	Interproscan
GO:0015141 all species →	Molecular Function	succinate transmembrane transporter activity	Interproscan
GO:0015297 all species →	Molecular Function	antiporter activity	Interproscan
GO:0015709 all species →	Biological Process	thiosulfate transport	Interproscan
GO:0015729 all species →	Biological Process	oxaloacetate transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0035435 all species →	Biological Process	phosphate ion transmembrane transport	Interproscan
GO:0071422 all species →	Biological Process	succinate transmembrane transport	Interproscan
GO:0071423 all species →	Biological Process	malate transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13577	SLC25A10, DIC; solute carrier family 25 (mitochondrial dicarboxylate transporter), member 10	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003262-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

166.6Max TPM

27.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.04	15.99
polyp at pH7 6	18	17	10.96	20.37
coral polyp · control treatment	16	16	21.63	53.45
coral polyp · oil and dispersant treatment	16	16	58.45	137.14
coral polyp · oil treatment	16	16	17.73	46.57
coral polyp · dispersant treatment	16	16	64.01	166.58
Polyp	10	10	8.02	14.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.99
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.70
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.79
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.31
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.57
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.28
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.39
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.10
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.77
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.41
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.70
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.16
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.08
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.37
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.86
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.32
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.44
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.64
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.53
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.23
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.79
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.57
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.47
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.36
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.18
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.07
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.95
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.37
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.62
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.45
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.22
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.79
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.50
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.73
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.71
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.24
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.21
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.67
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.29
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	137.14
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	105.65
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.15
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.11
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.75
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.95
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.44
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.09
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.85
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.43
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.18
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.66
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.55
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.86
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.12
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.08
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.21
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.07
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.04
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.09
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.58
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.77
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.10
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.02
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.78
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.28
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	166.58
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	116.72
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	112.49
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.88
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.59
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.34
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.41
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.66
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.32
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.50
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.87
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.42
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.28
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.79
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.59
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.09
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.86
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.01
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.92
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.84
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.52
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.88

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.