Gene detail

Detailed information of OS493_003263-T1 in Lophelia pertusa

Genomic Location: scaffold_6:7058998...7059564
NR annotation: KAJ7340511.1, hypothetical protein OS493_003263 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W740	Noggin-2 OS=Danio rerio OX=7955 GN=nog2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002075 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05806 all species →	Noggin	Noggin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008717 all species →	Family	Noggin	Interproscan
IPR029034 all species →	Homologous_superfamily	Cystine-knot cytokine	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10494 all species →	BONE MORPHOGENETIC PROTEIN INHIBITOR, NOGGIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001649 all species →	Biological Process	osteoblast differentiation	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0009953 all species →	Biological Process	dorsal/ventral pattern formation	Interproscan
GO:0030514 all species →	Biological Process	negative regulation of BMP signaling pathway	Interproscan
GO:0045596 all species →	Biological Process	negative regulation of cell differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04658	NOG; noggin	-	TGF-beta signaling pathway	ko04350	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003263-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

20.4Max TPM

3.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1.57	3.74
polyp at pH7 6	18	17	3.09	6.51
coral polyp · control treatment	16	16	4.38	11.88
coral polyp · oil and dispersant treatment	16	16	6.81	20.41
coral polyp · oil treatment	16	15	2.77	6.73
coral polyp · dispersant treatment	16	15	3.23	11.21
Polyp	10	9	1.64	3.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.29
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.40
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.38
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.86
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.85
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.84
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.08
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.07
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.97
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.95
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.73
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.46
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.51
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.21
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.25
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.14
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.28
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.34
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.05
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.67
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.18
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.01
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.88
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.44
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.58
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.65
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.20
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.35
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.90
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.82
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.84
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.81
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.03
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.43
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.41
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.65
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.53
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.89
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.52
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.90
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.31
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.90
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.20
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.06
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.05
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.77
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.76
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.51
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.29
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.87
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.74
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.52
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.84
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.59
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.56
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.21
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.21
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.89
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.85
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.84
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.90
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.61
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.18
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.76
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.16
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.61
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.53
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.49
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.