Gene detail

Detailed information of OS493_003303-T1 in Lophelia pertusa

Genomic Location: scaffold_7:116855...119599
NR annotation: KAJ7393647.1, hypothetical protein OS493_003303 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000104 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00021 all species →	UPAR_LY6	u-PAR/Ly-6 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016054 all species →	Domain	Ly-6 antigen/uPA receptor-like	Interproscan
IPR045860 all species →	Homologous_superfamily	Snake toxin-like superfamily	Interproscan
IPR018363 all species →	Conserved_site	CD59 antigen, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10036 all species →	CD59 GLYCOPROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_003303-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003303-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003303-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

83TPM > 0

7Conditions

273.2Max TPM

25.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	14	71.18	220.52
polyp at pH7 6	18	12	18.22	144.11
coral polyp · control treatment	16	15	24.39	273.25
coral polyp · oil and dispersant treatment	16	12	20.87	117.81
coral polyp · oil treatment	16	13	15.00	150.84
coral polyp · dispersant treatment	16	15	12.82	78.62
Polyp	10	2	2.73	26.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	220.52
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	216.81
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	125.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	122.80
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	122.41
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	122.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	115.54
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	91.01
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.97
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.85
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.78
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.83
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.53
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	144.11
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	132.12
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.28
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.81
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.73
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.78
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.41
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.68
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	273.25
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.35
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.45
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.08
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.75
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.11
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.06
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.71
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.10
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	117.81
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.21
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.95
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.32
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.87
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	150.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.54
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.11
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.82
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.58
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.37
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.87
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.64
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.49
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.62
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.22
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.93
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.97
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.33
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.71
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.25
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	26.62
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.65
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.