Gene detail

Detailed information of OS493_003349-T1 in Lophelia pertusa

Genomic Location: scaffold_7:616407...622605
NR annotation: KAJ7393691.1, hypothetical protein OS493_003349 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N4J0	Carnosine N-methyltransferase OS=Homo sapiens OX=9606 GN=CARNMT1 PE=1 SV=1
Q80UY1	Carnosine N-methyltransferase OS=Mus musculus OX=10090 GN=Carnmt1 PE=1 SV=1
Q5BJZ6	Carnosine N-methyltransferase OS=Rattus norvegicus OX=10116 GN=Carnmt1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006371 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07942 all species →	CARME	Carnosine N-methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012901 all species →	Family	Carnosine N-methyltransferase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12303 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008757 all species →	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0030735 all species →	Molecular Function	carnosine N-methyltransferase activity	Interproscan
GO:0035498 all species →	Biological Process	carnosine metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19787	CARNMT1; carnosine N-methyltransferase	EC:2.1.1.22	Histidine metabolism	ko00340	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003349-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

40.0Max TPM

17.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.38	31.96
polyp at pH7 6	18	18	20.01	35.20
coral polyp · control treatment	16	16	19.10	29.24
coral polyp · oil and dispersant treatment	16	16	13.60	21.18
coral polyp · oil treatment	16	16	18.35	25.08
coral polyp · dispersant treatment	16	16	11.09	19.83
Polyp	10	9	22.82	40.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.96
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.47
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.55
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.20
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.77
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.97
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.67
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.24
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.70
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.61
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.08
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.49
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.22
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.60
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.20
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.78
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.88
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.17
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.26
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.26
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.66
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.10
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.84
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.88
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.78
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.71
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.16
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.61
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.57
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.70
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.43
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.24
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.62
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.89
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.40
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.53
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.66
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.78
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.74
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.32
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.23
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.57
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.36
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.71
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.25
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.18
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.73
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.40
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.94
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.13
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.59
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.52
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.48
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.65
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.01
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.08
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.70
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.22
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.74
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.67
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.03
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.39
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.85
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.96
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.28
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.67
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.06
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.51
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.83
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.68
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.06
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.68
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.08
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.42
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.62
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.61
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.85
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.83
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.44
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.38
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	40.01
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	38.53
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	29.96
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	28.89
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	26.90
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	24.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.42
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.37
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.30
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.